Bioconductor works with a high throughput genomic data from DNA sequence. Instead of entering commands in the MATLAB ® Command Window, you can select and enter options using the app. The Sequence Viewer integrates many of the sequence functions in the Bioinformatics Toolbox toolbox. This is a definite recommendation for any molecular biologist. Bioconductor supports various useful packages such as:- ape package aids in. Exploring a Nucleotide Sequence Using the Sequence Viewer App Overview of the Sequence Viewer. EMBOSS gives sizes 35 for the Lambda x EcoRI/BamHI end fragments, while ApE shows 35. note: EMBOSS and ApE calculate fragment lengths differently e.g. DNA sequence analysis revealed potential transcription factor. download ApE, A plasmid Editor program, (right click to Save Target As 'ApE' on your desktop) Find restriction sites and fragment lenghts. The website for ApE is nothing flashy or fancy (and for that matter, neither is the program itself), but it is fully functional and does the job well. Deletion to 31 bp upstream of the transcriptional start site abolished APE promoter activity. Users can perform “virtual digests” whereby they select a predefined DNA ladder, or specify their own, and visualize the theoretical DNA fragments. If you only need a trace viewer or want to do basic editing other free software options are better because they have more trimming options and display the quality values. The software works is no longer maintained. There is a feature to display the translation of the coding region, as well an option to identify and display restriction enzyme sites within the DNA. BioEdit is free and provides many basic functions for protein and nucleic sequence editing, alignment, manipulation and analysis. Within the program, users can view circular or linear maps of their DNA sequences. This great piece of software from NCBI is a sequence viewer with a difference. ApE is free to download and runs across all three major platforms: Windows, OS X, and Linux/Unix. ApE can be used for sequence annotation, restriction mapping, primer design, and sequence alignment. Strong Points: Easy-to-use program, works across platformsĭo you drive yourself bananas trying to find a free, easy-to-use program to analyze plasmids, restriction digests, etc.? Well, you’ll go “ApE” over A Plasmid Editor, a program as simple in use as it is in name.

Ape sequence viewer